Hello everyone,
I would like to perform a Blast Search form within a Java application, i.e. I want to submit the query and evaluate the results. I have stumbled upon several jars on the web, but none of them was well documented.
I would love something like a nice tutorial or at least a decent documentation.
Any help is appreciated!
Regards Niklas
EDIT: Ok, i should have said this from the beginning: The whole thing runs on google's appengine, so I can't use any external programs or processes.
Re-EDIT: I ended up using the NCBI Blast URL API (http://blast.ncbi.nlm.nih.gov/blast_overview.shtml#access). It works very well and has a very good documentation.