Dear all, I have downloaded a number of SRA genomic seqeunce datasets. I am wondering if it's feasible to perform BLAST againt these datasets using a number of gene seqeunce. This analysis will identify my aim genes' homologous short reads, which can then be further assembled (which softwares can be used? this is another question of mine). These SRA data, which is huge, is obtained by illumina sequencing. I worry SRA reads are too short for BLAST. THANKS!
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