Quantcast
Viewing all articles
Browse latest Browse all 41826

Blastdb_Aliastool Error

Hi everyone,

I would like to build a human+bacteria+archaea subset of the nr database. So what I did is:

  1. Get the nr database
  2. Get the GI list of human+bacteria+archaea from Entrez Protein database
  3. Use this GI list with blastdb_aliastool to build an aliased database of the subset proteins. I used the following command and get the error

    blastdb_aliastool -db nr -gilist sequence_human_bacteria_archaea_26112013.gi -dbtype prot -out human_bacteria_archaea_nov2013 -title "Human plus bacteria and archaea entries"

    Converted 74595073 GIs from sequence_human_bacteria_archaea_26112013.gi to binary format in human_bacteria_archaea_nov2013.p.gil BLAST Database error: BLASTDB alias file creation failed. Some referenced files may be missing

Does anyone have any idea what the problem is?

Thanks!


Viewing all articles
Browse latest Browse all 41826

Trending Articles