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Using Blast2Go From The Command Line

Hi,

I am looking for a way of using Blast2Go on a remote server in a more or less FIRE AND FORGET manner. My idea is to use either a command line version of Blast2Go or an API that would permit me to use it on a server. So far, I have found neither.

Another approach I thought about was to have the server admin install X Window System capabilities to the server, plus a browser (like Konqueror) and the required java packages.

Maybe I am totally on the wrong track here and should resort to another approach, like a totally different automated annotation application.

Would you have any suggestions or comments concerning the following:

  • Command line access to Blast2Go on a server
  • Using X Window System (X11) and java on the server
  • Switching to another application

As always, many thanks!

Cheers


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