I have a contig from one organism that is of interest. I have been searching this contig against another organisms complete collection of contigs found on NCBI by using an online DNA translator and BLAST (bl2seq) to do so. There are several hundred pages of these and I am wondering, Is there a way to blast all of them at once? I have gone as far as splicing many together through the translator, but top out at 500,000 characters, and the method does not really increase efficiency.
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