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Convert Blast Table With Hsps To Alignment

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Hello

I have the following BLAST table format output:

GRMZM2G5555   GRMZM2G5555   100.00  5197    0       0       2886    8082    2886    8082    0.0     9880
GRMZM2G5555   GRMZM2G5555   100.00  1418    0       0       1       1418    1       1418    0.0     2769
GRMZM2G5555   GRMZM2G5555   100.00  1377    0       0       1445    2821    1445    2821    0.0     2688
GRMZM2G5555   GRMZM2G3333   99.13   1268    9       2       1445    2711    759     2025    0.0     2369
GRMZM2G5555   GRMZM2G3333   99.17   724     6       0       687     1410    1       724     0.0     1388
GRMZM2G5555   GRMZM2G2222   95.73   1310    23      8       4045    5333    647     1944    0.0     2068
GRMZM2G5555   GRMZM2G1111   96.41   668     15      5       4677    5342    8063    7403    0.0     1031
GRMZM2G5555   GRMZM2G1111   95.52   67      3       0       5428    5494    3703    3637    1e-21    109

I ran BLAST on a FASTA file against the same FASTA file. So the first hit will be itself. Now the BLAST output is providing several different HSPs. But I wanted all the HSPs to be combined and display as one, so that I can find the whole coverage of subject on query. Can anyone suggest me how to achieve this or a place to find the scripts for this problem.

thanks


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