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Formatdb And Non Coding Characters

Dear BioStar

I want to use a non coding character, eg X to process snp data. The X helps me to find the snp position in blast hits. However, when I format the blast database from a fasta file containing this character, it gets replaced by N. Is there a workaround for this, so that the X gets reported in the blast result?

thanks for your suggestions.

Jack


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