I am just wondering if anyone has done a timed test and/or a memory test with blastall compared to blastp. In other words, classic BLAST vs BLAST+. It'd be really interesting to get some kind of frequency distribution of the times it takes to blast one set of genes vs a database using each of the tools. The comparison could include any flavor of blast.
I know it's something I can do myself, but I'm being a little lazy about it and it could be something interesting that the biostar community can get together on.
