Hi i want to create a blast database from sequences that under blast are marked as "low complexity", is there a way to make makeblastdb turn off this filtering?
i'm aware that the sequences might be "low complexity" but under my specific application the sequences happen to be that way.
EDIT: the error i'm getting is at the time of building the database:
Ignoring sequence 'lcl|11859' as it has no sequence data Ignoring sequence 'lcl|11860' as it has no sequence data Ignoring sequence 'lcl|11861' as it has no sequence data Ignoring sequence 'lcl|11862' as it has no sequence data Ignoring sequence 'lcl|11863' as it has no sequence data Ignoring sequence 'lcl|11865' as it has no sequence data Ignoring sequence 'lcl|11866' as it has no sequence data Ignoring sequence 'lcl|11869' as it has no sequence data ... ... ..