Hi there
In need of help please!
I'm masking the repetitive regions in my wheat sequencing data using RepeatMasker. This generates a .masked file. Next I want to map or compare this masked file to other genome sequences but BWA uses fastq if I remember correctly. How can I convert the .masked file to a useable format? Or can it be used as-is???
Appreciate any comments, suggestions or previous experience :-)
Anandi