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each protein with each protein

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Dear colleagues,

I have a lot of proteins. What is the

simplest way to compare each one

of them with all the other proteins?

Probably I have to make a database

and use a program like BlastP.

But how to make sure that I've checked

all the protein pairs I have?

I feel that I have to use "for" in Linux,

but I've failed to finish the cycle expression.

Please. help me!

Many thanks!

N.


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