Hi
On the on line version of Blastp (link text) there is a sequence alignment section (and it produces E-values for the alignment).and now I want to use the standalone version to perform alignment(My platform is Windows). I had installed Blast.2.2.5+ from (link text) and I need the database.
I have looked here (link text) but don't know which one is the suitable one. can you please guide me on this?
also if the following command is correct?
psiblast -in_msa seq.txt -db target.fasta
Thanks for you help in advance.