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Help With Rps-Blast With New Blast

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Hi

I want to make rpsblast with the new blast 2.2.25 with rpstblastn. But I need to format the database. I think for the older blast version you use formatrpsdb and it´s create others files including .aux, but for this new version I dont know what to use.

I tried this

makeblastdb -in Pfam-A.fasta -title Pfam -logfile pfam

But it just creates .psq .pin and .phr, and if I use rpstblastn it says that canot find the .aux file

I hope someone can help me!!! Thanks!


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