Hi
I want to make rpsblast with the new blast 2.2.25 with rpstblastn. But I need to format the database. I think for the older blast version you use formatrpsdb and it´s create others files including .aux, but for this new version I dont know what to use.
I tried this
makeblastdb -in Pfam-A.fasta -title Pfam -logfile pfam
But it just creates .psq .pin and .phr, and if I use rpstblastn it says that canot find the .aux file
I hope someone can help me!!! Thanks!