Hi,
I have obtained BLAST output file in TSV file format which looks like -
# BLASTN 2.2.29+
# Query: SI2.2.0_06267 Si_gnF.scaffold02592[1282609..1284114].pep_2
# Database: ./nucleotide/Sinvicta2-2-3.cdna.subset.fasta
# Fields: query id, subject id, % identity, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score
# 1 hits found
SI2.2.0_06267 SI2.2.0_06267 100.00 240 0 0 1 240 1 240 1e-126 444
This output file has no visual alignment information (which is shown normally by aligning the query and hit sequences on top and drawing |'s in between to show matching). Is it possible to re-generate or create that from the information given by TSV output? If yes, what would be an efficient way to do that?
Please note that, I wish to use TSV output in first place.
Thanks,