Hi all:
I am calculating my e-Value for my own BLAST alignment.
I used the formulae: e= mn2^-S'
where: m = length of the query sequence n = total number of lengths of all template sequences in the template file S' = bit score.
I was wondering about parameter n: Do I need to sum all lengths of template sequences which are involved in the alignments or do I need to sum all lengths of _all_ template sequences and it doesn't matter if they are in the alignment involved or not?
Thanks!!