Hi,
I recently downloaded the new Fugu v5 assembly database from IMCB (http://www.fugu-sg.org/downloads/downloads3.htm). This is my first time using a chromosome level database (I am used to contig and scaffold).
I tried to use formatdb as I normally would to get the output files; however, nothing seems to be happening. Is there a way to use formatdb to format chromosome databases or am I supposed to do it in a different way? Am I missing some steps that precede formatdb?