Hi,
I make use of a local cluster (managed through LSF) to BLAST large sequence sets. I wrote a basic script to split a fasta file and submit each part as a different BLAST job. Does anyone know of such a script that is more advanced, and does things such as merge the ouput or restart failed jobs?
I could extend mine to do that, but I have this feeling that I would be reinventing the wheel.
And btw we have mpiBLAST installed, but I think it's not actually any faster than splitting the input file.